Index
allograft rejection, 76
alternative splicing, 37
Ancestry, 43
Andromeda, 91
annotation, 28
ANOVA, 63
ArrayExpress, 55
background correction, 53
background subtraction, 53
base calling, 24
biomarker and drug co-development, 139
biosignature, 133
BLAST, 27
Bowtie, 14
cancer cell, 78
causal inference, 72
Chromas Lite, 14
chromothripsis, 43
CIRCOS, 13
clinical trials, 138
Cluster, 57
CNV, 18
codon, 84
co-immunoprecipitation, 87
collective behavior, 116
combinatorial explosion, 4
Connectivity Map, 72
contig, 25
copy number variation, 18
electrospray ionization (ESI), 88
enrichment analysis, 70
EnrichNet, 57
enzyme linked immunosorbent assay (ELISA), 87
e-PCR, 12
F1 score, 137
Flicker, 92
Follicular lymphoma, 77
Function Express at Washington University, 58
functional annotations, 69
gene expression microarray, 51
Gene Set Enrichment Analysis (GSEA), 72
Genecards, 13
genetic algorithm, 40
GeneXPress, 58
genome annotation, 28
genome browser, 11
genome wide association study, 30
GenomeBrowse, 13
genomic sequencing, 23
genomic structure, 10
genomic variants, 16
genotyping arrays, 17
GEO, 55
GEO2R, 55
Goldsurfer2, 37
GSEA, 57
GWAS, 30
hallmarks of cancer, 112
haplotype, 21
Hardy-Weinberg equilibrium, 33
H-DBAS, 37
hepatitis C, 140
heritability, 39
hierarchical clustering, 68
Human Protein Atlas, 90
human viral protein interaction, 102
hypergeometric distribution, 70
Lillifore test, 64
LIMMA, 56
linkage disequilibrium, 19
liquid chromatography (LC), 89
LocusZoom, 15
M vs. A plot, 67
Manhattan plot, 37
Mann–Whitney U, 63
Mascot, 92
mass spectrom feature extraction, 92
mass spectrom matching, 93
Mass spectrometry, 87
matrix assisted laser desorption ionization (MALDI), 88
Matthew correlation coefficient, 137
MaxQuant, 91
metagenomcis, 119
micro RNA, 50
microarray data normalization, 54
microbiome, 119
Mitocheck cell-cycle genes, 111
molecular signature, 76
MRMer, 92
MS/MS ion matching, 93
multiplex reaction monitoring (MRM), 97
paired test, 62
Past, 56
PCA plot, 66
PDB, 91
peptide mass fingerprinting (PMF), 93
phase locking, 124
phylogeny, 120
PolyPhred, 24
PolyScan, 24
positive predictive value (PPV), 136
Primer-BLAST, 12
principal component analysis (PCA), 65
prognosis, 77
PROSITE, 90
protein domains, 98
Protein identification, 89
protein motif, 98
protein structure prediction, 99
RefSNP, 37
regression, 133
relative risk, 36
renal transplantation, 76
RNA deep sequencing, 52
RNA secondary structure, 75
Robust Multiarray Analysis (RMA), 54
scaffold, 25
SCOP, 91
SeattleSNPs, 13
sensitivity, 136
sequence alignment, 26
sequence read assembly, 25
signal noise ratio (SNR), 62
Significance Analysis of Microarray (SAM), 56
similarity clustering, 67
SNAP, 15
SNP, 17
SNP array base calling, 28
SNP combinations, 39
SNP detector, 24
SNP tagging, 19
somatic copy number alterations, 42
specificity, 136
stem cell, 78
summarization, 54
survival analysis, 134
SWISS-Model, 91
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