Contents
List of Symbols and Abbreviations
IIntroduction to Images and Computing using Python
1.3.2Anaconda Python Distribution
1.5Basic Python Statements and Data Types
2Computing using Python Modules
3.2.5Connectivity: 4 or 8 Pixels
3.4Data Structures for Image Analysis
3.5Reading, Writing and Displaying Images
3.5.2Reading DICOM Images using pyDICOM
3.5.4Writing DICOM Images using pyDICOM
IIImage Processing using Python
4.3Edge Detection using Derivatives
4.3.2Second Derivative Filters
4.3.2.2Laplacian of Gaussian Filter
5.7Contrast Limited Adaptive Histogram Equalization (CLAHE)
5.10Local Contrast Normalization
7.2Definition of Fourier Transform
7.3Two-Dimensional Fourier Transform
7.3.1Fast Fourier Transform using Python
7.4.1Convolution in Fourier Space
7.5Filtering in the Frequency Domain
7.5.2Butterworth Lowpass Filter
7.5.5Butterworth Highpass Filter
8.2Histogram-Based Segmentation
8.5Segmentation Algorithm for Various Modalities
8.5.1Segmentation of Computed Tomography Image
8.5.2Segmentation of MRI Image
8.5.3Segmentation of Optical and Electron Microscope Images
9.5Grayscale Dilation and Erosion
9.7Grayscale Opening and Closing
11.5Neural Network for Classification Problems
11.6Neural Network Example Code
12Convolutional Neural Network
13X-Ray and Computed Tomography
13.3.2X-Ray Generation Process
13.4.2Lambert-Beer Law for Multiple Materials
13.4.3Factors Determining Attenuation
13.5.3Flat Panel Detector (FPD)
13.9.1Geometric Misalignment Artifacts
13.9.3Offset and Gain Correction
14.2Laws Governing NMR and MRI
14.3.3T1 and T2 Relaxation Times
14.5MRI Signal Detection or MRI Imaging
14.7T1, T2 and Proton Density Image
14.8MRI Modes or Pulse Sequence
15.2.5Point Spread Function (PSF)
15.3Construction of a Wide-Field Microscope
15.5.2Properties of Fluorochromes
16.2.2Interaction of Electron with Matter
16.2.3Interaction of Electrons in TEM
16.2.4Interaction of Electrons in SEM
16.7Factors Determining Image Quality
AProcess-Based Parallelism using Joblib
A.1Introduction to Process-Based Parallelism
BParallel Programming using MPI4Py
B.2Need for MPI in Python Image Processing
B.5.1Point-to-Point Communication
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