Index
Basic Analysis
Numerics
3D Correspondence Analysis option 219–229
5% Contours option 126
A
Agreement Statistic option 211, 220–221, 238
All fits 59–85
All Graphs option 149
All Pairs, Tukey HSD test 161, 164–184
Analysis of Means
charts 159–179
for Proportions option 210, 218
options 160
Analysis of Means Methods 146, 158–160
Analysis of Variance
See also Oneway
report 110–112, 154–155
ANOM 158
See also Analysis of Means
for Variances 159, 179–180
for Variances with Levene (ADM) 159
with Transformed Ranks 159
B
Bartlett test 172
Beta Binomial fit 86–87
Beta fit 81
Binomial fit 86
Bivariate Normal Ellipse menu 123–126
Bivariate platform 97
example 99
launching 99
options 101–104, 123–127
report window 100
Block button 94
Block Means report 156
bootstrapping 275–283
Box plots 149
Brown-Forsythe test 171
C
Capability Analysis option 56–58, 75–78
CDF plot 147–148, 177
Cell Labeling option 213
Change Format option 292
Change Item Label 300
Change Plot Scale option 292
closing JMP Starter window 25
Cochran Armitage Trend Test 211, 224
Cochran Mantel Haenszel test 210, 220
Coefficient of Variation 295
Color by Density Quantile option 126
Color Theme option 214
column tables 299
Compare Densities option 177
Compare Means options 146, 161–166
comparison circles 149, 162–163, 197–198
Composition of Densities option 177
Confid Curves Fit option 124
Confid Curves Indiv option 124
Confid Quantile option 165
Confid Shaded Fit option 125
Confid Shaded Indiv option 125
Confidence Interval options 44, 53
Confidence Limits option 62
Connect Means option 149–150
Connecting Letters Report 165
Contingency platform 203
example 207–208
launching 208
options 210–211
report window 208
Contingency Table 210, 214–216
Continuous Fit options 58–85
Contour Fill option 126
Contour Lines option 126
Correlation report 120
Correspondence Analysis option 210, 218–231
Count Axis option 44, 46
Covariance of Estimates report 251
D
Densities options 147, 177
Density Axis option 44, 47
Density Curve option 60
Density Ellipse option 103, 119–120
density estimation fits 104
Detailed Comparisons Report 166
Details report 219
Diagnostic Plot option 60, 62–63
Difference Matrix option 165
Discrete Fit options 60–87
Display Options 148–150, 160, 218
for categorical variables 43
for continuous variables 45–46
Distribution platform 29
categorical variables in 31
continuous variables in 31
example 31–33
launching 33
options 42–55
report window 34–36
Dunn All Pairs for Joint Ranks test 168
Dunn With Control for Joint Ranks test 168
E
Each Pair, Student’s t test 161, 163–182
Equal Variances option 118
Equivalence Test option 146, 174–189
Exact Test 211, 224
See also Fisher’s Exact Test
options 167
Exponential fit 80
Extreme Value fit 80
F
Fisher’s Exact Test 218
Fit Each Value
command 103, 117
menu 123–125
report 117
Fit Line command 103, 106–113, 135
Fit Mean
command 102, 104–105
menu 123–125
report 105
Fit Orthogonal command 103, 118–122, 135
Fit Polynomial command 103, 106–138
Fit Special command 103, 113–115
Fit Spline command 103, 115–116, 135
Fit X to Y option 118
Fit Y by X platform 91
Fix Parameters option 60
Frequencies
option 43
report 39
G
Gamma fit 80
Gamma Poisson fit 85–86
GLog fit 84
Goodness of Fit
option 60
tests 63–89
Gradient Between Ends option 214
Gradient Between Selected Points option 214
Grand Mean option 149
Graph in Variance Scale option 160
Group By option 102, 122–123
H
Histogram Options 46
histograms 36–64
borders option 101, 122
color option 44, 46
creating subsets 36
highlighting data 36, 38
option in Oneway 150
options for categorical variables 43
options for continuous variables 46–47
rescaling 36
resizing 36–37
selecting data 38
specifying data 37
Horizontal Layout option 43, 46
I
Include missing for grouping columns option 292
Inverse Prediction option 251
Iterations report 248
J
jitter 255
JMP Starter 25
JMP tutorials 25
Johnson fits 82–84
K
Kernel Control option 126
Kolmogorov Smirnov Test 167
Kruskal-Wallis test, see Wilcoxon Test
L
Lack of Fit report 108–110
Levene test 171
Lift Curve option 252
Line Color option 124
Line of Fit option 62, 124, 177
Line Style option 124
Line Width option 124
Linear Fit
menu 123–125
report 106–138
Logistic platform 241
See also logistic regression
Covariance of Estimates report 251
examples 244–245, 254–258
Iterations report 248
launching 246
logistic plot 247, 251
options 251–254
Parameter Estimates report 250
report window 246–251
Whole Model Test report 248–250
logistic regression 241, 243
LogNormal fit 79
LSD Threshold Matrix option 165
M
Macros option 214
Make Into Data Table option 301
Mann-Whitney test, see Wilcoxon Test
Matched Pairs platform 263, 265
examples 265–266, 270–272
launching 266
multiple Y columns 267
options 270
report window 268–269
statistical details 272
Tukey mean-difference plot 268–269
Matching Column option 148, 178
Matching Dotted Lines option 150
Matching Lines option 150, 178
Max (summary statistics) 294
Mean CI Lines option 149
Mean Diamonds option 149, 156–157
Mean Error Bars option 149, 157
Mean Lines option 149, 157
Mean of Means option 149
Means and Std Dev option 146
Means for Oneway Anova report 156
Means/Anova option 145, 151
Means/Anova/Pooled t option 145, 151
Measures of Association option 211, 222–223
Median (summary statistics) 295
Median Reference Line option 63
Median Test 167
menu tips 26
Mesh Plot option 126
Min (summary statistics) 294
Model Clustering option 126
Mosaic Plot
in Contingency 210, 212–214
option in Distribution 44
N
N and N Missing (summary statistics) 294
N Categories (summary statistics) 295
Nonpar Density command 103, 121–122
Nonparametric
options 146
tests 166
Nonparametric Bivariate Density report 121
Nonparametric Multiple Comparisons tests 168
Normal fit 79
Normal Mixtures fits 82
Normal Quantile Plot 47–49, 147, 177
O
O’Brien test 171
Odds Ratios option 211, 251
Oneway platform 139, 141
example 141–143
launching 143
options 144–150
plot 143
opening
JMP Starter window 25
Order by count of grouping columns option 292
Order By option 44
Ordered Differences Report 166
Orthogonal Fit Ratio menu 123–125
Orthogonal Regression report 118
Outlier Box Plot 49–50
P
paired t-test 263, 265
Parameter Estimates report 112–138, 250
Plot Actual by Quantile option 177
Plot Dif by Mean option 270
Plot Dif by Row option 270
Plot Options menu in Logistic 252
Plot Quantile by Actual option 177
Plot Residuals option 125
Points Jittered option 150
Points option 149
Points Spread option 149
Poisson fit 85
Polynomial Fit Degree menu 123–125
Polynomial Fit report 106–138
Power option 146, 175–176, 198–199
Prediction Interval option 55–68, 74
Prob Axis option 44, 47
Proportion of Densities option 177
Q
Quantile Box Plot 50
Quantile Density Contours menu 123–127
Quantiles
option 45, 60, 71, 145, 150–151
report 39
R
ranges, summary statistics 294
Reference Frame option 270
regression fits for Bivariate 104
Relative Risk option 211, 221
Remove Column Label 300
Remove Fit option 61, 125
Report option 124
Restore Column Label 300
Revert to Old Colors option 214
ROC Curve option 252
Rotate option 62
row profile 219
row tables 299
S
sample size, in tabulate 301
Save Coefficients option 125
Save Colors to Column option 214
Save commands in Distribution 44, 54–55
Save Density Formula command 61
Save Density Grid option 126
Save Density Quantile option 126
Save Fitted Quantiles command 61
Save for Adobe Flash platform (.SWF) option 43
Save options
in Oneway 148
Save Predicteds option 124
Save Probability Formula option 252
Save Residuals option 125
Save Spec Limits command 61
Save Value Ordering option 219
Saved Transformed command 61
Select Colors for Values window 213
Select Points by Density option 126
Select Points Inside option 126
Select Points Outside option 126
Separate Bars option 44
Set Alpha Level option
for Bivariate 125
for Contingency 210, 218
for Matched Pairs 270
for Oneway 147, 160
Set Bin Width option 46
Set Colors option 213
Set Spec Limits for K Sigma option 61
Shaded Contour option 126
Shadowgram option 46
Show Center Line option 160
Show Chart option 300
Show Control Panel option 301
Show Counts option 44, 47
Show Decision Limit Shading option 160
Show Decision Limits option 160
Show Needles option 160
Show Percents option 44, 47
Show Points option
for Bivariate 101
Show Shading option 301
Show Summary Report option 160, 218
Show Table option 300
Show Test Build Panel option 301
Show tooltip option 300
Sign Test 270
Smooth Curve fit 82
Smoothing Spline Fit
menu 123
report 115
Spec Limits option 61, 63
Specified Variance Ratio option 118
Specify Transformation or Constraint window 114, 128
Stack option 42
Standard Deviation 294
Standard Error 295
Std Dev and Std Err (summary statistics) 294
Std Dev Lines option 149, 157
Std Error Bars option 44, 46
Steel With Control test 168
Steel-Dwass All Pairs test 168
Stem and Leaf plot 51
Student’s t test 161, 163–182
Subset option 36
Summary of Fit report 107–108, 152
Summary Statistics
customize 46
options 42
report 39, 45
Switch Response Level for Proportion option 218
T
t test
option 146
report 153–154
Tabulate 285–310
Test Mean option 52–53
Test Probabilities option 44–66
Test Std Dev option 53
Tests
option in Contingency 210
report 216–217
Tolerance Interval option 55–69, 74–75
tooltips 26
Transformed Fit
menu 123–125
report 114
Tukey mean-difference plot 268–269
tutorials 25
Two Sample Test for Proportions 211, 222
U
Unequal Variances 146, 171–172
Uniform plot scale option 292
Uniform Scaling option 42
Univariate Variances, Prin Comp option 118
V
van der Waerden Test 167
Variance (summary statistics) 295
Vertical option 44, 46
W-Z
Weibull fits 79
Welch’s test 172
Whole Model Test report 248–250
Wilcoxon Each Pair test 168
Wilcoxon Signed Rank test 270
Wilcoxon Test 166
With Best, Hsu MCB test 161, 164–185
With Control, Dunnett’s test 161, 165
X Axis proportional option 149, 156–157
X, Continuous Regressor button 95
X, Grouping button 95
X, Grouping Category button 95
X, Regressor button 95
Y, Categorical Response button 95
Y, Response Category button 95
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