Visualizing distributions of peptide hit counts to find thresholds

Every MS experiment will need some idea of the peptide hit counts that represent noise or unusual features, such as over-represented peptides in the proteome. In this recipe, we'll use some neat visualization tricks using tidyverse tools such as dplyr and ggplot to create graphics that will help you get an idea of the spread and limits of the peptide hits in your mass spectrometry experiment.

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