Index
A_purva
Acid growth
ACO algorithm
Adaptive adjustment of relaxation parameter (AARP)
Aggregation
Alga
Algorithm
ant colony optimization (ACO)-based algorithm
CSVM algorithm
computational algorithms
DSSP algorithm
Edmonds–Gabow algorithm
feature selection algorithm
fuzzy C-means clutering algorithm
graph algorithm
greedy K-means clustering algorithm
geometry algorithm
GG algorithm
GSVM algorithm
heuristic algorithm
K-means clustering algorithm
linear discriminant algorithm
maximal clique algorithm
nearest-neighbor algorithm (NNA)
PPI network alignment algorithms
protein similarity algorithm
suffix tree construction algorithms
similarity algorithm
unsupervised clustering algorithm
Algorithmic method
Amino acid
properties
sidechains
Annotation
Ant colony optimization (ACO)
ANTH (AP180 N-terminal homology)
Application
Approximation handling
Arabidopsis thaliana
Arginine
Auxin binding protein
Auxin flow
Backbone
Backbone fluctuation
Background
BAR (Bin/Amphiphysin/Rvs)
Barriers
Basic category
Binding site
Biochemical
Biochemical reaction
Biocyc
Biofuel
Bioinformatics
Biological function
Biological network
Biological network domain
Biological network modeling
Biological process
Biological relevance
Biological sequences
Biosequences
Biosequences domain
Bisection method
Blockmaker
BLOSUM matrix
Bond
Boundary
Bounded treewidth
Breast cancer
Bryophytes
Bucket
C1
C2
Calcium
CATH
CE
Cell
Cell constituent
Cell elongation
Cell growth phase
Cell lifecycle
Cell metabolism
Cell motility
Cell polarity
Cell signaling
Cellular compartment
Cellular component
Cell wall
Challenge
Chaos
Chromatin
Chromatography
Clique-based method
Cluster
Clustering method
Coalition
Coarse-grain comparison
Coefficient
Coil
Coli-sheet-coil motif
Column
Column sum substitution technique (CSS)
Combinatorial chemistry
Common substring
Communication
Compaction
Complex biological network
Complex disease
Complexity
Complex protein permutations
Component
Computational biology
Computational method
Computation method
Concept
Connectivity
Constraint
Contact
Continuous wavelet transform (CWT)
Coworkers
Criteria
Cryoelectron microscopy
Cryomicroscopy
Crystal structure
Cysteine
DALI, see Distance matrix alignment
Data
Protein Data Bank (PDB)
data-sparse
database queries
Decompose
Definitions
Degree
Degree distribution
Density-based clustering
Detrended fluctuation
Deviation
Diacylglycerol
Differential expansion rate
Dihydrofolate reductase (DHFR)
Dimension
Dissimilarity
Distance matrix (DM)
Distance matrix alignment (DALI)
Distance measure
Distance path
Disulfide
Dogma
Domain listing
Drug activity
Dynamic
Dynamic programming algorithm
Effort
Eigensystem
Eigenvector
Electron microscopy
Elements
Elongation
Ensemble
ENTH (epsin N-terminal homology)
Enzyme
Estimate
Evo–devo
Execution
Execution time
Expansin
Experimental method
Extensin proteins
Extraction
F-actin
Factor
FASTA format
Feature
Feature granules
Feature selection algorithm
FERM (four-point one-ezrin-radixin-moesin)
Ferns
Fixed-parameter tractability (FPT)
Flagellate
Formation
Formula
Formulation
Fragment size
Framework
Fuzzy C-means clustering
algorithm
FYVE
Gauge
Gene coexpression network
Gene expression disease
Gene expression signature
Generalized network alignment
Gene regulatory networks
GeneSigDB
Genetics
Genetic signature
Geometric suffix tree
Geometry
Gibbs sampling
Global alignment
Global backbone level
Glycosyltransferase
GNOM
Granular kernel trees (GKTs)
Granule
Graph-theoretic algorithm
Gymnosperms
Hash
Helix
Helix–loop–helix
Heterochromatin
Heterogeneity
Hierarchical clustering
Hierarchical clustering methods
Hierarchical kernel
Histogram
Homeomorphisms
Homology
Homomorphisms
Human genome
Hybrid system
Hydrophobicity
Image
Immunoprecipitation
Index
Inhibitor
Integral membrane protein
Intelligence
Intensity
Intermolecular interaction
Interactome
Interval
Invasiveness
Ion
KEGG
Kernel
Kinase
Kinetics
Lateral organ formation
Line
Linear regression
Lipid
Lipid binding domains (LBDs)
Local alignment
Local surface comparison
Local sequence similarity
Low-molecular-weight substances
Low overlap
Lumbar spinal cord
Lycopods
Lysine
Machine learning
Machine learning techniques
hidden Markov models (HMM)
lipid binding domains (LBD)
membrane targeting domains (MTDs)
modified multilevel access scheme (MMAS)
nuclear magnetic resonance (NMR)
orientation of protein in membranes (OPM)
structural classification of proteins (SCOP)
structural risk minimization (SRM)
support vector machines (SVM)
Macromolecule
Maintenance
Margin
Matching-based methods
Mathematical framework
Matrix
MD resources
Mean path
Measure
Measure representation
Mechanisms
Membrane protein
Membrane targeting domains (MTDs)
Membrane trafficking
MEME
Metabolic network alignment
Metabolic networks
Metabolic pathway
MeTaDoR
Metazoan
Methods
Methylation
Metrics
Microscopic techniques
Mismatch
Model assessment methods
Modified multilevel access scheme (MMAS)
Modular domains
Molecular biology
Molecular component
Molecular function
Molecule
Motif
MTDs
Multifractal spectrum
Multigrid method
Multiple structures
Musite
NAD binding proteins
Neighbor
Network
Network alignment
Network domain
Network querying
η-Nitrogens
NMR spectroscopy
Node similarity computation
Nonobligate protein complex
Nonsequential protein structure similarities
NP-complete
Nuclear magnetic resonance (NMR)
Nucleic acid
Nucleoplasmin core
Nucleotides
Nucleotide sequence
Obligate protein complex
Online resource
Optimization approaches
Optimization problem
Order
Organism
Orientation
Orientation of protein in membranes (OPM)
Overlapping module
Oxidation
Parallel
Pareto optima
Partition-based clustering
Peculiarity
Peptide
Peptide fragments
Peripheral protein
PH (pleckstrin homology)
Phase
Phenotype
Phorbol ester
Plants
Plasma membrane
Platform
Polyadenylation
Polynomial time
PPI network
PPI network alignment
algorithms
Precision
Precursor
Prediction server
Primary sequence
Primary structure
Probabilistic model
Process
Progress
Propensity
Protein complex
Protein Data Bank (PDB)
3D structural data
crystallized structure
PDBSELECT90 dataset
RCSB PDB
Protein function
Protein functional module
Protein interaction data
Protein interaction network
Protein phosphorylation
Proteins encoded
Protein sequence
Protein Sequence Culling Server (PISCES)
Protein similarity
algorithm
Protein structural similarity
Protein-protein analysis
Protein-protein interaction network
Proteolysis
Proteomic
Protocol
Pseudocode
PX (phox)
Pyrimidine
Pyrimidines drug activity comparison
Quality
Quantitative structure–activity relationship
Quaternary structure
Query
Ratio
Reagent
Recall specificity
Repeated modules
Repetitions
Repetitiveness
Residue
RNA
RNase
Routine
Row
Saccharomyces cerevisiae
Salesperson problem
Scheme
SCOP
Scoring method
Search function
Secondary structure
Section
Semidefinite
Sensitivity
Sequence
Sequence comparison methods
Sequence similarity
Sequence-similar proteins
Shortest path
Sialyltransferase
Signal transduction networks
Signature pocket
Similarity matrix
Single multimolecular machine
Single positive vector
Single structure
Sparse graph
Sparse matrix
Spectral bisection
Spectral method
Spectrometry
Spectrum
State
Structural alignment
Structural classification of proteins (SCOP)
Structural proteins
Structural similarity
Structure–activity relationship (SAR)
Subcellular location
Subgraph isomorphism checking
Subinterval
Subnetwork
Substitution matrix
Substring
Substructure
Suffix trees
Sulfhydryl
Support
Support vector machines (SVMs)
Swiss-Prot
Technique
Tertiary structure
Three-dimensional structure
3D positional
3D protein mainchain structure
3D protein structure
Threshold
Tissue
Tolerance
Tomography
Toolkit
Tools
alignment tools
appropriate computational tools
computational tools
continuous tools
discovery tools
machine learning tools
prediction tools
Topology
Torsion angles
Transition
Transmembrane protein
Trend
Triazine
Tubby domains
Turgor
Validation
Value
Variant
Vector
Vector machine, see Support vector machines
Vector space model
Viral infection
Viterbi algorithm
Vivo
Volvox
Wavelet
Weighted graph model
Window size
X-ray crystallography
Yamashita
Yeast
Zygote