P
PAPER
chemical informatics
21–27
vs
. OpenEye ROCS
30
,
32
Parallel computing techniques
brain connectivity reconstruction
793
fast circuit optimization
parallel gate implementation evaluation
372–373
genome-matching
algorithms, implementations, evaluations
176–183
benefits and limitations
183
CUDA kernel parameter settings
180–181
medical image processing
746
,
748
programmable graphics pipeline
427
Parallel distribution, BigDFT code
147
Parallelism
ant colony optimization
325
Barnes Hut
n
-body algorithm
75
,
86
,
89
B-spline registration
752
CT image reconstruction
673
molecular electrostatics
43
,
49
programmable graphics pipeline
434
radiographic image simulation
824
real-time speed-limit-sign recognition
498
,
514
template-driven agent-based modeling
313
Parallelization techniques
black hole simulations
106
brain connectivity reconstruction
795
B-spline registration
762
CT image reconstruction
algorithms, implementations, evaluations
661–672
GSO calculations, overview
22–23
image/video processing
561
L’Ecuyer's multiple recursive generator MRG32k3a
233–234
Mersenne Twister MT19937
238
molecular electrostatics
47
radiographic image simulation
821
,
825
random number generators
L’Ecuyer's multiple recursive generator MRG32k3a
232–235
Sobol quasi-random generator
235–236
Parallel local tracking, temporal data mining
216–217
Parallel programming
fast circuit optimization
374
Pareto optimal set, CT reconstruction performance
707
Park-Miller pseudorandom number generator
334
Partial differential equations (PDEs)
brain connectivity reconstruction
794–795
ITK-based medical imaging
740
Particle to multipole treecode (P2M), fast
n
-body simulations
115–116
,
120
Particle to particle treecode (P2P), fast
n
-body simulations
115–117
,
120
,
122–125
Path regeneration, random walks
processing unit utilization
403
Patterned-Pixel Group method (PPG), de-mosaicing
586
,
595–597
Pattern matching acceleration, with supercomputer clusters
algorithms, implementations, evaluations
187–192
row/column parallel approach
188–191
Peak-to-sidelobe ratio (PSR), speed-limit-sign recognition
502
Pearson's correlation coefficient (PMCC), image/video processing
547–551
,
561–563
Perceptual linear prediction (PLP), speech models
613
Performance analysis
brain connectivity reconstruction
809–811
genome-matching acceleration
182–183
Graph Cuts for computer vision
447–448
programmable graphics pipeline in CUDA
433–434
radiographic image simulation
822–827
speed-limit-sign recognition
507–513
Photon buffer, photon transport
256
Photon transport
parallel random number generation
256
radiation dose visualization
260–261
Pixels
character recognition application
289
iterated function systems
269
order-independent transparency
428–434
Planck constant, photon transport
248
Playable Universal Capture
414
Pointer-chasing memory operations, Barnes Hut
n
-body algorithm via CUDA
75–76
Point-generation kernel, Chaos Game algorithm
267
Poisson-Boltzmann Equation (PBE), electrostatics algorithms
44
Poisson equation, and BigDFT code
134
,
137
Poisson problems, gravitation/electrostatics
113
Poisson process, temporal data mining
222
Poisson statistics, tomographic image reconstruction
689
Polymethyl methacrylate (PMMA), rendering
392–393
Population size, and AntMinerGPU performance
338–339
Positron emission tomography (PET)
deformable registration algorithm
751–752
image reconstruction from randomly ordered lines
algorithms, implementations, evaluations
684–686
list-mode image reconstruction
679–681
Post-Newtonian (PN) approximation, overview
104–105
Precision issues
black hole simulations
106
B-spline registration
751
CT image reconstruction
660
dynamical quadrature grids
35
,
39–40
molecular electrostatics
55–56
radiographic image simulation
824
Prefix sums
iterated function systems
270
template-driven agent-based modeling
314–315
,
320
Programmable graphics pipeline, for order-independent transparency
algorithms, implementations, evaluations
428–433
fixed-size A-buffer scheme
433
Progressive multiresolution adaptive windows, real-time stereo on GP-GPU
algorithms, implementations, evaluations
475–485
multiresolution background modeling
475–478
multiresolution
vs
. single resolution
487–490
multiresolution stereo matching
478–479
Projections-Over-Convex-Sets (POCS) method
Propagation
electronic structure
59–72
gate-level simulation
345
,
363
information in computer vision
447
random walk path regeneration
401–402
Prospective gate, fast circuit optimization
370–371
,
377
Pseudoknots, RNA folding
200
Push operation, Graph Cuts for computer vision
parallel push implementation
441–443
parallel relabel implementation
443–444